Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs35246989 chr6:44898117 CA/C 8.59E-5 170 19.62 15.77 14 KM Plot
PAAD rs35326835 chr16:81190413 T/C 1.17E-12 175 15.57 15.33 1.37 KM Plot
PAAD rs35375016 chr3:39046651 G/A 0.000166 176 15.27 16.37 7.47 KM Plot
PAAD rs35401929 chr1:16228959 T/TA 1.67E-6 178 15.57 14.57 3.43 KM Plot
PAAD rs35554962 chr15:78327333 GT/G 0 178 15.48 17.4 1.03 KM Plot
PAAD rs35578784 chr15:81569370 TA/TAA 6.57E-5 173 15.57 15.4 1.37 KM Plot
PAAD rs35601687 chr1:227510995 G/A 3.22E-5 178 15.55 15.43 3.9 KM Plot
PAAD rs35627549 chr5:140524984 A/C 1.72E-5 177 15.95 14.33 7.85 KM Plot
PAAD rs35656661 chr5:171586271 C/T 2.77E-5 174 15.67 14.3 5.05 KM Plot
PAAD rs35708490 chr18:35542056 T/C 9.76E-6 177 15.57 15.13 3.67 KM Plot
PAAD rs35713028 chr3:39096720 G/A 0.000149 178 15.27 16.37 7.47 KM Plot
PAAD rs35795531 chr3:39095855 G/T 0.000149 178 15.27 16.37 7.47 KM Plot
PAAD rs35935676 chr3:39124545 A/C 0.000149 178 15.27 16.37 7.47 KM Plot
PAAD rs35991735 chr6:44820741 AG/A 2.41E-6 177 11.77 16.2 16.37 KM Plot
PAAD rs35994691 chr2:179041086 C/T 5.93E-10 178 15.95 13.07 2.2 KM Plot